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Bioconductor - Rgraphviz

Rgraphviz

This is the released version of Rgraphviz; for the devel version, see Rgraphviz.

Provides plotting capabilities for R graph objects

Bioconductor version: Release (3.21)

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("Rgraphviz")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rgraphviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")

Details biocViews GraphAndNetwork, Software, Visualization Version 2.52.0 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License EPL Depends R (>= 2.6.0), methods, utils, graph, grid Imports stats4, graphics, grDevices System Requirements optionally Graphviz (>= 2.16), USE_C17 URL See More Suggests RUnit, BiocGenerics, XML Linking To Enhances Depends On Me biocGraph, BioMVCClass, CellNOptR, MineICA, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs, maEndToEnd, dlsem, gridGraphviz Imports Me apComplex, biocGraph, bnem, chimeraviz, CytoML, dce, DEGraph, EnrichDO, EnrichmentBrowser, flowWorkspace, GeneNetworkBuilder, GOstats, hyperdraw, KEGGgraph, mirIntegrator, MIRit, mnem, OncoSimulR, ontoProc, paircompviz, pathview, Pigengene, qpgraph, SGCP, TRONCO, abn, agena.ai, BCDAG, BiDAG, bnpa, bnRep, ceg, CePa, classGraph, cogmapr, graphpcor, ontologyPlot, SEMgraph, stablespec, WayFindR Suggests Me a4, altcdfenvs, annotate, Category, CNORfeeder, CNORfuzzy, DEGraph, flowCore, geneplotter, GlobalAncova, globaltest, GSEABase, MLP, NCIgraph, RBGL, RBioinf, rBiopaxParser, Rtreemix, safe, SPIA, SRAdb, Streamer, topGO, ViSEAGO, vtpnet, NCIgraphData, SNAData, arulesViz, BayesNetBP, bnlearn, bnstruct, bsub, ChoR, CodeDepends, gbutils, GeneNet, HEMDAG, iTOP, kst, lava, loon, maGUI, micd, multiplex, netmeta, ParallelPC, pcalg, pchc, pks, psych, relations, rEMM, rPref, rSpectral, SCCI, sisal, textplot, tm, topologyGSA, tpc, unifDAG, zenplots Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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