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Bioconductor - Organism.dplyr

Organism.dplyr

This is the released version of Organism.dplyr; for the devel version, see Organism.dplyr.

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: Release (3.21)

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Daniel van Twisk [ctb], Yubo Cheng [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("Organism.dplyr")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Organism.dplyr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Organism.dplyr")
Details biocViews Annotation, GenomeAnnotation, Sequencing, Software Version 1.36.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 4.1.0), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3) Imports RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, rlang, methods, tools, utils, BiocFileCache, DBI, dbplyr, tibble System Requirements URL Bug Reports https://github.com/Bioconductor/Organism.dplyr/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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