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Bioconductor - NanoTube

NanoTube

This is the released version of NanoTube; for the devel version, see NanoTube.

An Easy Pipeline for NanoString nCounter Data Analysis

Bioconductor version: Release (3.21)

NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. Analysis functions include differential analysis and gene set analysis methods, as well as postprocessing steps to help understand the results. Additional functions are included to enable interoperability with other Bioconductor NanoString data analysis packages.

Author: Caleb Class [cre, aut] ORCID: 0000-0003-3130-3613 , Caiden Lukan [ctb]

Maintainer: Caleb Class <cclass at butler.edu>

Citation (from within R, enter citation("NanoTube")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NanoTube")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NanoTube")
Details biocViews DifferentialExpression, GeneExpression, QualityControl, Software Version 1.14.0 In Bioconductor since BioC 3.14 (R-4.1) (3.5 years) License GPL-3 + file LICENSE Depends R (>= 4.1), Biobase, ggplot2, limma Imports fgsea, methods, reshape, stats, utils System Requirements URL See More Suggests grid, kableExtra, knitr, NanoStringDiff, pheatmap, plotly, rlang, rmarkdown, ruv, RUVSeq, shiny, testthat, xlsx Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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