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Bioconductor - MultiBaC

MultiBaC

This is the released version of MultiBaC; for the devel version, see MultiBaC.

Multiomic Batch effect Correction

Bioconductor version: Release (3.21)

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")

Maintainer: The package maintainer <manuelugidos at gmail.com>

Citation (from within R, enter citation("MultiBaC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiBaC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiBaC")
Details biocViews BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription Version 1.18.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL-3 Depends Imports Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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