This is the released version of Motif2Site; for the devel version, see Motif2Site.
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditionsBioconductor version: Release (3.21)
Detect binding sites using motifs IUPAC sequence or bed coordinates and ChIP-seq experiments in bed or bam format. Combine/compare binding sites across experiments, tissues, or conditions. All normalization and differential steps are done using TMM-GLM method. Signal decomposition is done by setting motifs as the centers of the mixture of normal distribution curves.
Author: Peyman Zarrineh [cre, aut] ORCID: 0000-0003-4820-4101
Maintainer: Peyman Zarrineh <peyman.zarrineh at manchester.ac.uk>
Citation (from within R, entercitation("Motif2Site")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Motif2Site")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Motif2Site")Follow Installation instructions to use this package in your R session.
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