This is the released version of Maaslin2; for the devel version, see Maaslin2.
"Multivariable Association Discovery in Population-scale Meta-omics Studies"Bioconductor version: Release (3.21)
MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.
Author: Himel Mallick [aut], Ali Rahnavard [aut], Lauren McIver [aut, cre]
Maintainer: Lauren McIver <lauren.j.mciver at gmail.com>
Citation (from within R, entercitation("Maaslin2")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Maaslin2")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Maaslin2")Follow Installation instructions to use this package in your R session.
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