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Bioconductor - MLInterfaces

MLInterfaces

This is the released version of MLInterfaces; for the devel version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: Release (3.21)

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vincent Carey [cre, aut] ORCID: 0000-0003-4046-0063 , Jess Mar [aut], Jason Vertrees [ctb], Laurent Gatto [ctb], Phylis Atieno [ctb] (Translated vignettes from Sweave to Rmarkdown / HTML.)

Maintainer: Vincent Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MLInterfaces")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")

A machine learning tutorial tutorial: applications of the Bioconductor MLInterfaces package to gene expression data HTML R Script MLInterfaces 2.0 -- a new design HTML R Script MLInterfaces Computer Cluster PDF R Script Reference Manual PDF NEWS Text Details biocViews Classification, Clustering, Software Version 1.88.1 In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20 years) License LGPL Depends R (>= 3.5), Rcpp, methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster Imports gdata, pls, sfsmisc, MASS, rpart, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats, magrittr, SummarizedExperiment System Requirements URL See More Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, BiocStyle, knitr, testthat Linking To Enhances parallel Depends On Me pRoloc, SigCheck, dGAselID, nlcv Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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