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Bioconductor - INSPEcT

INSPEcT

This is the released version of INSPEcT; for the devel version, see INSPEcT.

Modeling RNA synthesis, processing and degradation with RNA-seq data

Bioconductor version: Release (3.21)

INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or steady-state conditions, with or without the support of nascent RNA data.

Author: Stefano de Pretis

Maintainer: Stefano de Pretis <ste.depo at gmail.com>, Mattia Furlan <Mattia.Furlan at iit.it>

Citation (from within R, enter citation("INSPEcT")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("INSPEcT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("INSPEcT")
INSPEcT - INference of Synthesis, Processing and dEgradation rates from Transcriptomic data HTML R Script INSPEcT_GUI.html HTML R Script Reference Manual PDF NEWS Text Details biocViews GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse Version 1.38.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License GPL-2 Depends R (>= 3.6), methods, Biobase, BiocParallel Imports pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors, GenomeInfoDb, DESeq2, plgem, rtracklayer, SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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