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GeneStructureTools

This is the released version of GeneStructureTools; for the devel version, see GeneStructureTools.

Tools for spliced gene structure manipulation and analysis

Bioconductor version: Release (3.21)

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, enter citation("GeneStructureTools")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneStructureTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneStructureTools")

Details biocViews AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License BSD_3_clause + file LICENSE Depends Imports Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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