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Bioconductor - FitHiC

FitHiC

This is the released version of FitHiC; for the devel version, see FitHiC.

Confidence estimation for intra-chromosomal contact maps

Bioconductor version: Release (3.21)

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

Author: Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)

Maintainer: Ruyu Tan <rut003 at ucsd.edu>

Citation (from within R, enter citation("FitHiC")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FitHiC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FitHiC")
Details biocViews DNA3DStructure, Software Version 1.34.0 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License GPL (>= 2) Depends Imports data.table, fdrtool, grDevices, graphics, Rcpp, stats, utils System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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