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Bioconductor - EnrichedHeatmap

EnrichedHeatmap

This is the released version of EnrichedHeatmap; for the devel version, see EnrichedHeatmap.

Making Enriched Heatmaps

Bioconductor version: Release (3.21)

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Author: Zuguang Gu [aut, cre] ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("EnrichedHeatmap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnrichedHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnrichedHeatmap")
Details biocViews Coverage, GenomeAnnotation, Sequencing, Software, Visualization Version 1.38.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License MIT + file LICENSE Depends R (>= 3.6.0), methods, grid, ComplexHeatmap(>= 2.11.0), GenomicRanges Imports matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges System Requirements URL https://github.com/jokergoo/EnrichedHeatmap See More Package Archives

Follow Installation instructions to use this package in your R session.

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