This is the released version of EBImage; for the devel version, see EBImage.
Image processing and analysis toolbox for RBioconductor version: Release (3.21)
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej OleÅ, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej OleÅ <andrzej.oles at gmail.com>
Citation (from within R, entercitation("EBImage")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EBImage")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBImage")
Details biocViews Software, Visualization Version 4.50.0 In Bioconductor since BioC 1.8 (R-2.3) (19 years) License LGPL Depends methods Imports BiocGenerics(>= 0.7.1), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl System Requirements URL https://github.com/aoles/EBImage Bug Reports https://github.com/aoles/EBImage/issues See More Suggests BiocStyle, digest, knitr, rmarkdown, shiny Linking To Enhances Depends On Me CRImage, cytomapper, flowcatchR, DonaPLLP2013, furrowSeg, MerfishData, nucim Imports Me alabaster.sfe, bnbc, Cardinal, CatsCradle, cytoviewer, flowCHIC, heatmaps, imcRtools, MoleculeExperiment, RBioFormats, simpleSeg, sosta, SpatialFeatureExperiment, SpatialOmicsOverlay, synapsis, xenLite, yamss, BioImageDbs, AiES, bioimagetools, GoogleImage2Array, LFApp, LOMAR, ProxReg, RockFab, SAFARI, spatialGE Suggests Me HilbertVis, Voyager, spicyWorkflow, aroma.core, cooltools, glow, ijtiff, juicr, lidR, metagear, pliman, rcaiman Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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