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Bioconductor - DominoEffect

DominoEffect

This is the released version of DominoEffect; for the devel version, see DominoEffect.

Identification and Annotation of Protein Hotspot Residues

Bioconductor version: Release (3.21)

The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.

Author: Marija Buljan and Peter Blattmann

Maintainer: Marija Buljan <marija.buljan.2 at gmail.com>, Peter Blattmann <peter_blattmann at bluewin.ch>

Citation (from within R, enter citation("DominoEffect")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DominoEffect")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DominoEffect")
Details biocViews Alignment, Proteomics, SequenceMatching, Software, SomaticMutation Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License GPL (>= 3) Depends R (>= 3.5) Imports biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, GenomeInfoDb, IRanges, GenomicRanges, methods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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