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Bioconductor - CopyNumberPlots

CopyNumberPlots

This is the released version of CopyNumberPlots; for the devel version, see CopyNumberPlots.

Create Copy-Number Plots using karyoploteR functionality

Bioconductor version: Release (3.21)

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

Author: Bernat Gel <bgel at igtp.cat> and Miriam Magallon <mmagallon at igtp.cat>

Maintainer: Bernat Gel <bgel at igtp.cat>

Citation (from within R, enter citation("CopyNumberPlots")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CopyNumberPlots")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyNumberPlots")
Details biocViews CopyNumberVariation, Coverage, DNASeq, DataImport, OneChannel, Sequencing, Software, Visualization Version 1.24.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License Artistic-2.0 Depends R (>= 3.6), karyoploteR Imports regioneR, IRanges, Rsamtools, SummarizedExperiment, VariantAnnotation, methods, stats, GenomeInfoDb, GenomicRanges, cn.mops, rhdf5, utils System Requirements URL https://github.com/bernatgel/CopyNumberPlots Bug Reports https://github.com/bernatgel/CopyNumberPlots/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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