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Bioconductor - CellNOptR

CellNOptR

This is the released version of CellNOptR; for the devel version, see CellNOptR.

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Bioconductor version: Release (3.21)

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: Thomas Cokelaer [aut], Federica Eduati [aut], Aidan MacNamara [aut], S Schrier [ctb], Camille Terfve [aut], Enio Gjerga [ctb], Attila Gabor [cre]

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

Citation (from within R, enter citation("CellNOptR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CellNOptR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CellNOptR")
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data with CellNOptR HTML R Script Reference Manual PDF NEWS Text Details biocViews CellBasedAssays, CellBiology, ImmunoOncology, Network, Pathways, Proteomics, Software, TimeCourse Version 1.54.0 In Bioconductor since BioC 2.9 (R-2.14) (13.5 years) License GPL-3 Depends R (>= 4.0.0), RBGL, graph, methods, RCurl, Rgraphviz, XML, ggplot2, rmarkdown Imports igraph, stringi, stringr System Requirements Graphviz version >= 2.2 URL See More Suggests data.table, dplyr, tidyr, readr, knitr, RUnit, BiocGenerics Linking To Enhances doParallel, foreach Depends On Me CNORdt, CNORfuzzy, CNORode Imports Me bnem, CNORfeeder Suggests Me MEIGOR Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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