This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.
Package for CTDbase data query, visualization and downstream analysisBioconductor version: Release (3.21)
Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.
Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier Escribà -Montagut [cre]
Maintainer: Xavier Escribà -Montagut <xavier.escriba at isglobal.org>
Citation (from within R, entercitation("CTDquerier")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CTDquerier")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details biocViews BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software Version 2.16.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License MIT + file LICENSE Depends R (>= 4.1) Imports RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache System Requirements URL See More Package ArchivesFollow Installation instructions to use this package in your R session.
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