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Bioconductor - CCAFE

CCAFE

This is the released version of CCAFE; for the devel version, see CCAFE.

Case Control Allele Frequency Estimation

Bioconductor version: Release (3.21)

Functions to reconstruct case and control AFs from summary statistics. One function uses OR, NCase, NControl, and SE(log(OR)). The second function uses OR, NCase, NControl, and AF for the whole sample.

Author: Hayley Wolff [cre, aut]

Maintainer: Hayley Wolff <hayley.wolff at cuanschutz.edu>

Citation (from within R, enter citation("CCAFE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CCAFE")
Details See More Suggests testthat (>= 3.0.0), rmarkdown, markdown, knitr, tidyverse, DescTools, cowplot, BiocStyle, GenomicRanges, SummarizedExperiment, S4Vectors, IRanges Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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