This is the released version of Banksy; for the devel version, see Banksy.
Spatial transcriptomic clusteringBioconductor version: Release (3.21)
Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that capture gene expression gradients. These features are combined with the cell's own expression to embed cells in a neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.
Author: Vipul Singhal [aut], Joseph Lee [aut, cre] ORCID: 0000-0002-4983-4714
Maintainer: Joseph Lee <joseph.lee at u.nus.edu>
Citation (from within R, entercitation("Banksy")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Banksy")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Banksy")Follow Installation instructions to use this package in your R session.
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