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Bioconductor - BSgenomeForge

BSgenomeForge

This is the released version of BSgenomeForge; for the devel version, see BSgenomeForge.

Forge your own BSgenome data package

Bioconductor version: Release (3.21)

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Author: Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("BSgenomeForge")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenomeForge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BSgenomeForge")
Details biocViews Alignment, Annotation, DataImport, DataRepresentation, GenomeAnnotation, GenomeAssembly, Infrastructure, SequenceMatching, Sequencing, Software Version 1.8.0 In Bioconductor since BioC 3.17 (R-4.3) (2 years) License Artistic-2.0 Depends R (>= 4.3.0), methods, BiocGenerics, IRanges, GenomeInfoDb(>= 1.33.17), Biostrings, BSgenome Imports utils, stats, Biobase, S4Vectors, GenomicRanges, BiocIO, rtracklayer System Requirements URL https://bioconductor.org/packages/BSgenomeForge Bug Reports https://github.com/Bioconductor/BSgenomeForge/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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