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Bioconductor - AnnotationHubData

AnnotationHubData

This is the released version of AnnotationHubData; for the devel version, see AnnotationHubData.

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Release (3.21)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHubData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationHubData")
Introduction to AnnotationHubData HTML Reference Manual PDF NEWS Text Details biocViews DataImport, Software Version 1.38.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License Artistic-2.0 Depends R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.15.15) Imports GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, BiocCheck, graph, AnnotationDbi, Biobase, Biostrings, DBI, GenomeInfoDb(>= 1.15.4), OrganismDbi, RSQLite, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl System Requirements URL See More Suggests RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub Linking To Enhances Depends On Me ExperimentHubData Imports Me AHMassBank, AHEnsDbs, EuPathDB Suggests Me HubPub, EPICv2manifest, GenomicState, TENET.AnnotationHub, homosapienDEE2CellScore, humanHippocampus2024, smokingMouse Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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