A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/release/bioc/html/../../workflows/html/ExpHunterSuite.html below:

Bioconductor - ExpHunterSuite

ExpHunterSuite

This is the released version of ExpHunterSuite; for the devel version, see ExpHunterSuite.

Package For The Comprehensive Analysis Of Transcriptomic Data

Bioconductor version: Release (3.21)

The ExpHunterSuite implements a comprehensive protocol for the analysis of transcriptional data using established *R* packages and combining their results. It covers all key steps in DEG detection, CEG detection and functional analysis for RNA-seq data. It has been implemented as an R package containing functions that can be run interactively. In addition, it also contains scripts that wrap the functions and can be run directly from the command line.

Author: James Perkins [aut, cre] ORCID: 0000-0003-4108-096X , Pedro Seoane Zonjic [aut] ORCID: 0000-0002-3020-1415 , Fernando Moreno Jabato [aut] ORCID: 0000-0001-7498-1962 , José Córdoba Caballero [aut] ORCID: 0000-0002-1821-5742 , Elena Rojano Rivera [aut] ORCID: 0000-0002-2678-710X , Rocio Bautista Moreno [aut] ORCID: 0000-0003-1685-8119 , M. Gonzalo Claros [aut] ORCID: 0000-0002-0112-3550 , Isabel Gonzalez Gayte [aut], Juan Antonio García Ranea [aut] ORCID: 0000-0003-0327-1837

Maintainer: James Perkins <jimrperkins at gmail.com>

Citation (from within R, enter citation("ExpHunterSuite")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExpHunterSuite")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExpHunterSuite")
Details biocViews GeneExpressionWorkflow, Workflow Version 1.16.0 License MIT + file LICENSE Depends R (>= 4.1.0) Imports ReactomePA, limma, edgeR, NOISeq, biomaRt, topGO, diffcoexp, DT, ggplot2, stringr, WGCNA, dplyr, AnnotationDbi, BiocGenerics, enrichplot, rmarkdown, stats, Biobase, DESeq2, ROCR, data.table, knitr, magrittr, SummarizedExperiment, miRBaseVersions.db, grDevices, graphics, utils, BiocParallel, MKinfer, matrixStats, ggupset, rlang, plyr, tidyr, GO.db, Matrix, fastcluster, DOSE, heatmaply, EnhancedVolcano, ggrepel, clusterProfiler, GenomicRanges, GenomicFeatures, tximport, annotatr, ggridges, FactoInvestigate, FactoMineR System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4