This is the released version of msdata; for the devel version, see msdata.
Various Mass Spectrometry raw data example filesBioconductor version: Release (3.21)
Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.
Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, entercitation("msdata")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details See More Suggests xcms, mzR, MSnbase Linking To Enhances Depends On Me Imports Me MsQuality Suggests Me IPO, koinar, MetaboAnnotation, MsBackendSql, MsExperiment, MSnbase, mzR, peakPantheR, PSMatch, QFeatures, Spectra, SpectraQL, TargetDecoy, xcms, RforProteomics Links To Me Build Report Build Report Package ArchivesFollow Installation instructions to use this package in your R session.
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