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Bioconductor - SFEData

SFEData

This is the released version of SFEData; for the devel version, see SFEData.

Example SpatialFeatureExperiment datasets

Bioconductor version: Release (3.21)

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Author: Lambda Moses [aut, cre] ORCID: 0000-0002-7092-9427 , Alik Huseynov [aut] ORCID: 0000-0002-1438-4389 , Kayla Jackson [aut] ORCID: 0000-0001-6483-0108 , Lior Pachter [aut, ths] ORCID: 0000-0002-9164-6231

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Citation (from within R, enter citation("SFEData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SFEData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SFEData")
Details biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue Version 1.10.0 License Artistic-2.0 Depends R (>= 4.1.0) Imports BiocFileCache, AnnotationHub, ExperimentHub, utils System Requirements URL https://github.com/pachterlab/SFEData Bug Reports https://github.com/pachterlab/SFEData/issues See More Suggests BiocStyle, knitr, rmarkdown, SeuratObject, SpatialFeatureExperiment, testthat (>= 3.0.0) Linking To Enhances Depends On Me Imports Me Suggests Me alabaster.sfe, concordexR, jazzPanda, SpatialFeatureExperiment, Voyager, xenLite Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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