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Bioconductor - HCAData

HCAData

This is the released version of HCAData; for the devel version, see HCAData.

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Bioconductor version: Release (3.21)

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Author: Federico Marini [aut, cre] ORCID: 0000-0003-3252-7758

Maintainer: Federico Marini <marinif at uni-mainz.de>

Citation (from within R, enter citation("HCAData")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCAData")
Details See More Suggests knitr, rmarkdown, BiocStyle, scran(>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat Linking To Enhances Depends On Me OSCA.workflows Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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