This is the released version of srnadiff; for the devel version, see srnadiff.
Finding differentially expressed unannotated genomic regions from RNA-seq dataBioconductor version: Release (3.21)
srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.
Author: Zytnicki Matthias [aut, cre], Gonzalez Ignacio [aut]
Maintainer: Zytnicki Matthias <matthias.zytnicki at inra.fr>
Citation (from within R, entercitation("srnadiff")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("srnadiff")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("srnadiff")Follow Installation instructions to use this package in your R session.
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