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Bioconductor - seqLogo

seqLogo

This is the released version of seqLogo; for the devel version, see seqLogo.

Sequence logos for DNA sequence alignments

Bioconductor version: Release (3.21)

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom [aut], Robert Ivanek [aut, cre] ORCID: 0000-0002-8403-056X

Maintainer: Robert Ivanek <robert.ivanek at unibas.ch>

Citation (from within R, enter citation("seqLogo")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqLogo")
Details See More Suggests knitr, BiocStyle, rmarkdown, testthat Linking To Enhances Depends On Me rGADEM, generegulation Imports Me IntEREst, PWMEnrich, RCAS, rGADEM, riboSeqR, scanMiR, SPLINTER, TENET, TFBSTools, kmeRtone Suggests Me BCRANK, DiffLogo, igvR, MAGAR, motifcounter, MotifDb, universalmotif Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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