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Bioconductor - regsplice

regsplice

This is the released version of regsplice; for the devel version, see regsplice.

L1-regularization based methods for detection of differential splicing

Bioconductor version: Release (3.21)

Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("regsplice")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("regsplice")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regsplice")
Details biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, ImmunoOncology, Microarray, RNASeq, Sequencing, Software Version 1.34.1 In Bioconductor since BioC 3.4 (R-3.3) (8.5 years) License MIT + file LICENSE Depends Imports glmnet, SummarizedExperiment, S4Vectors, limma, edgeR, stats, pbapply, utils, methods System Requirements URL https://github.com/lmweber/regsplice Bug Reports https://github.com/lmweber/regsplice/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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