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Bioconductor - ptairMS

ptairMS

This is the released version of ptairMS; for the devel version, see ptairMS.

Pre-processing PTR-TOF-MS Data

Bioconductor version: Release (3.21)

This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Citation (from within R, enter citation("ptairMS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairMS")
ptaiMS: Processing and analysis of PTR-TOF-MS data HTML R Script Reference Manual PDF NEWS Text Details biocViews Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software Version 1.16.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License GPL-3 Depends Imports Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils System Requirements URL Bug Reports https://github.com/camilleroquencourt/ptairMS/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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