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Bioconductor - plyranges

plyranges

This is the released version of plyranges; for the devel version, see plyranges.

A fluent interface for manipulating GenomicRanges

Bioconductor version: Release (3.21)

A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.

Author: Stuart Lee [aut] ORCID: 0000-0003-1179-8436 , Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb] ORCID: 0000-0003-1000-1579 , Pierre-Paul Axisa [ctb], Michael Love [ctb, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("plyranges")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plyranges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plyranges")

Details biocViews Coverage, DataRepresentation, Infrastructure, Software, WorkflowStep Version 1.28.0 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License Artistic-2.0 Depends R (>= 3.5), BiocGenerics, IRanges(>= 2.12.0), GenomicRanges(>= 1.28.4) Imports methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>= 1.0.0), rtracklayer, GenomicAlignments, GenomeInfoDb, Rsamtools, S4Vectors(>= 0.23.10), utils System Requirements URL Bug Reports https://github.com/tidyomics/plyranges See More Suggests knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0), HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, covr, ggplot2 Linking To Enhances Depends On Me Imports Me BOBaFIT, BUSpaRse, cfDNAPro, Damsel, GenomicPlot, InPAS, katdetectr, mariner, methylCC, multicrispr, nearBynding, nullranges, plotgardener, plyinteractions, SARC, SingleMoleculeFootprinting, tidyomics, fluentGenomics Suggests Me EpiCompare, extraChIPs, memes, rigvf, svaNUMT, svaRetro, tidyCoverage, CTCF Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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