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Bioconductor - phenopath

phenopath

This is the released version of phenopath; for the devel version, see phenopath.

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Release (3.21)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("phenopath")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phenopath")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenopath")
Details biocViews Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software Version 1.32.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License Apache License (== 2.0) Depends Imports Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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