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panelcn.mops

This is the released version of panelcn.mops; for the devel version, see panelcn.mops.

CNV detection tool for targeted NGS panel data

Bioconductor version: Release (3.21)

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid [aut], Gundula Povysil [aut, cre]

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")

Details biocViews CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection Version 1.30.0 In Bioconductor since BioC 3.6 (R-3.4) (7.5 years) License LGPL (>= 2.0) Depends R (>= 3.5.0), cn.mops, methods, utils, stats, graphics Imports GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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