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Bioconductor - hicVennDiagram

hicVennDiagram

This is the released version of hicVennDiagram; for the devel version, see hicVennDiagram.

Venn Diagram for genomic interaction data

Bioconductor version: Release (3.21)

A package to generate high-resolution Venn and Upset plots for genomic interaction data from HiC, ChIA-PET, HiChIP, PLAC-Seq, Hi-TrAC, HiCAR and etc. The package generates plots specifically crafted to eliminate the deceptive visual representation caused by the counts method.

Author: Jianhong Ou [aut, cre] ORCID: 0000-0002-8652-2488

Maintainer: Jianhong Ou <jou at morgridge.org>

Citation (from within R, enter citation("hicVennDiagram")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hicVennDiagram")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hicVennDiagram")
Details biocViews DNA3DStructure, HiC, Software, Visualization Version 1.6.0 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License GPL-3 Depends R (>= 4.3.0) Imports GenomeInfoDb, GenomicRanges, IRanges, InteractionSet, rtracklayer, ggplot2, ComplexUpset, reshape2, eulerr, S4Vectors, methods, utils, htmlwidgets, svglite System Requirements URL https://github.com/jianhong/hicVennDiagram Bug Reports https://github.com/jianhong/hicVennDiagram/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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