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Bioconductor - ggtreeExtra

ggtreeExtra

This is the released version of ggtreeExtra; for the devel version, see ggtreeExtra.

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

Bioconductor version: Release (3.21)

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Author: Shuangbin Xu [aut, cre] ORCID: 0000-0003-3513-5362 , Guangchuang Yu [aut, ctb] ORCID: 0000-0002-6485-8781

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

Citation (from within R, enter citation("ggtreeExtra")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeExtra")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeExtra")
Details biocViews Annotation, Phylogenetics, Software, Visualization Version 1.18.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL (>= 3) Depends Imports ggplot2, utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr System Requirements URL https://github.com/YuLab-SMU/ggtreeExtra/ Bug Reports https://github.com/YuLab-SMU/ggtreeExtra/issues See More Suggests treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar Linking To Enhances Depends On Me Imports Me MicrobiotaProcess Suggests Me enrichplot, ggmsa, pctax, TransProR Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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