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Bioconductor - ggkegg

ggkegg

This is the released version of ggkegg; for the devel version, see ggkegg.

Analyzing and visualizing KEGG information using the grammar of graphics

Bioconductor version: Release (3.21)

This package aims to import, parse, and analyze KEGG data such as KEGG PATHWAY and KEGG MODULE. The package supports visualizing KEGG information using ggplot2 and ggraph through using the grammar of graphics. The package enables the direct visualization of the results from various omics analysis packages.

Author: Noriaki Sato [cre, aut]

Maintainer: Noriaki Sato <nori at hgc.jp>

Citation (from within R, enter citation("ggkegg")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggkegg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggkegg")

Details biocViews DataImport, KEGG, Pathways, Software Version 1.6.0 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License MIT + file LICENSE Depends R (>= 4.3.0), ggplot2, ggraph, XML, igraph, tidygraph Imports BiocFileCache, data.table, dplyr, magick, patchwork, shadowtext, stringr, tibble, methods, utils, stats, grDevices, gtable System Requirements URL https://github.com/noriakis/ggkegg Bug Reports https://github.com/noriakis/ggkegg/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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