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Bioconductor - enrichplot

enrichplot

This is the released version of enrichplot; for the devel version, see enrichplot.

Visualization of Functional Enrichment Result

Bioconductor version: Release (3.21)

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] ORCID: 0000-0002-6485-8781 , Chun-Hui Gao [ctb] ORCID: 0000-0002-1445-7939

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")
Details biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization Version 1.28.2 In Bioconductor since BioC 3.7 (R-3.5) (7 years) License Artistic-2.0 Depends R (>= 4.1.0) Imports aplot (>= 0.2.1), DOSE(>= 3.31.2), ggfun (>= 0.1.7), ggnewscale, ggplot2, ggrepel (>= 0.9.0), ggtangle (>= 0.0.5), graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, rlang, stats, utils, scatterpie, GOSemSim(>= 2.31.2), magrittr, ggtree, yulab.utils (>= 0.1.6) System Requirements URL https://yulab-smu.top/contribution-knowledge-mining/ Bug Reports https://github.com/GuangchuangYu/enrichplot/issues See More Suggests clusterProfiler, dplyr, europepmc, ggarchery, ggupset, glue, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, ggHoriPlot, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggstar, scales, ggtreeExtra, tidydr Linking To Enhances Depends On Me maEndToEnd Imports Me CBNplot, ChIPseeker, clusterProfiler, debrowser, enrichViewNet, meshes, MicrobiomeProfiler, ReactomePA, RFLOMICS, TDbasedUFEadv, ExpHunterSuite Suggests Me GeoTcgaData, mastR, methylGSA, ggpicrust2, ReporterScore, SCpubr Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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