This is the released version of dandelionR; for the devel version, see dandelionR.
Single-cell Immune Repertoire Trajectory Analysis in RBioconductor version: Release (3.21)
dandelionR is an R package for performing single-cell immune repertoire trajectory analysis, based on the original python implementation. It provides the necessary functions to interface with scRepertoire and a custom implementation of an absorbing Markov chain for pseudotime inference, inspired by the Palantir Python package.
Author: Jiawei Yu [aut] ORCID: 0009-0005-9170-7881 , Nicholas Borcherding [aut] ORCID: 0000-0003-1427-6342 , Kelvin Tuong [aut, cre] ORCID: 0000-0002-6735-6808
Maintainer: Kelvin Tuong <z.tuong at uq.edu.au>
Citation (from within R, entercitation("dandelionR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dandelionR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dandelionR")Follow Installation instructions to use this package in your R session.
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