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Bioconductor - crisprBwa

crisprBwa

This is the released version of crisprBwa; for the devel version, see crisprBwa.

BWA-based alignment of CRISPR gRNA spacer sequences

Bioconductor version: Release (3.21)

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("crisprBwa")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprBwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprBwa")
Details biocViews Alignment, CRISPR, FunctionalGenomics, Software Version 1.12.0 In Bioconductor since BioC 3.15 (R-4.2) (3 years) License MIT + file LICENSE Depends methods Imports BiocGenerics, BSgenome, crisprBase(>= 0.99.15), GenomeInfoDb, Rbwa, readr, stats, stringr, utils System Requirements URL https://github.com/crisprVerse/crisprBwa Bug Reports https://github.com/crisprVerse/crisprBwa/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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