This is the released version of biobroom; for the devel version, see biobroom.
Turn Bioconductor objects into tidy data framesBioconductor version: Release (3.21)
This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.
Author: Andrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto
Maintainer: John D. Storey <jstorey at princeton.edu> and Andrew J. Bass <ajbass at emory.edu>
Citation (from within R, entercitation("biobroom")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biobroom")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biobroom")
Details See More Suggests limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase, rmarkdown, SummarizedExperiment Linking To Enhances Depends On Me Imports Me TPP Suggests Me Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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