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Bioconductor - beachmat

beachmat

This is the released version of beachmat; for the devel version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: Release (3.21)

Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("beachmat")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("beachmat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")
Details See More Suggests testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array, beachmat.hdf5 Linking To Rcpp, assorthead Enhances Depends On Me Imports Me batchelor, beachmat.hdf5, beachmat.tiledb, BiocSingular, bsseq, DropletUtils, epiregulon, glmGamPoi, mumosa, scater, scran, scrapper, scuttle, SingleR Suggests Me mbkmeans, PCAtools, scCB2 Links To Me beachmat.hdf5, beachmat.tiledb, BiocSingular, bsseq, dreamlet, DropletUtils, epiregulon, glmGamPoi, mbkmeans, PCAtools, scran, scrapper, scuttle, SingleR Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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