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Bioconductor - bamsignals

bamsignals

This is the released version of bamsignals; for the devel version, see bamsignals.

Extract read count signals from bam files

Bioconductor version: Release (3.21)

This package allows to efficiently obtain count vectors from indexed bam files. It counts the number of reads in given genomic ranges and it computes reads profiles and coverage profiles. It also handles paired-end data.

Author: Alessandro Mammana [aut, cre], Johannes Helmuth [aut]

Maintainer: Johannes Helmuth <johannes.helmuth at laborberlin.com>

Citation (from within R, enter citation("bamsignals")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bamsignals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bamsignals")
Details See More Suggests testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown Linking To Rcpp, Rhtslib(>= 1.13.1), zlibbioc Enhances Depends On Me Imports Me AneuFinder, crupR, DNAfusion, epigraHMM, karyoploteR, normr, segmenter, hoardeR Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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