This is the released version of affxparser; for the devel version, see affxparser.
Affymetrix File Parsing SDKBioconductor version: Release (3.21)
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R, entercitation("affxparser")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affxparser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation Details See More Suggests R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles Linking To Enhances Depends On Me ITALICS, pdInfoBuilder Imports Me affyILM, cn.farms, EventPointer, GeneRegionScan, ITALICS, oligo Suggests Me TIN, aroma.affymetrix, aroma.apd Links To Me Build Report Build Report Package ArchivesFollow Installation instructions to use this package in your R session.
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