This is the released version of VplotR; for the devel version, see VplotR.
Set of tools to make V-plots and compute footprint profilesBioconductor version: Release (3.21)
The pattern of digestion and protection from DNA nucleases such as DNAse I, micrococcal nuclease, and Tn5 transposase can be used to infer the location of associated proteins. This package contains useful functions to analyze patterns of paired-end sequencing fragment density. VplotR facilitates the generation of V-plots and footprint profiles over single or aggregated genomic loci of interest.
Author: Jacques Serizay [aut, cre] ORCID: 0000-0002-4295-0624
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R, entercitation("VplotR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VplotR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VplotR")Follow Installation instructions to use this package in your R session.
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