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Bioconductor - RITAN

RITAN

This is the released version of RITAN; for the devel version, see RITAN.

Rapid Integration of Term Annotation and Network resources

Bioconductor version: Release (3.21)

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann [aut, cre]

Maintainer: Michael Zimmermann <mtzimmermann at mcw.edu>

Citation (from within R, enter citation("RITAN")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RITAN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RITAN")
Details biocViews FunctionalGenomics, GeneSetEnrichment, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, QualityControl, Software Version 1.32.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License file LICENSE Depends R (>= 4.0) Imports graphics, methods, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata, GenomicFeatures, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86 System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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