This is the released version of MatrixRider; for the devel version, see MatrixRider.
Obtain total affinity and occupancies for binding site matrices on a given sequenceBioconductor version: Release (3.21)
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R, entercitation("MatrixRider")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MatrixRider")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MatrixRider")Follow Installation instructions to use this package in your R session.
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