This is the released version of HiCExperiment; for the devel version, see HiCExperiment.
Bioconductor class for interacting with Hi-C files in RBioconductor version: Release (3.21)
R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.
Author: Jacques Serizay [aut, cre] ORCID: 0000-0002-4295-0624
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R, entercitation("HiCExperiment")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiCExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCExperiment")Follow Installation instructions to use this package in your R session.
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