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Bioconductor - GenomicDataCommons

GenomicDataCommons

This is the released version of GenomicDataCommons; for the devel version, see GenomicDataCommons.

NIH / NCI Genomic Data Commons Access

Bioconductor version: Release (3.21)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Sean Davis [aut, cre], Marcel Ramos [ctb]

Maintainer: Sean Davis <seandavi at gmail.com>

Citation (from within R, enter citation("GenomicDataCommons")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDataCommons")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDataCommons")
Details biocViews DataImport, Sequencing, Software Version 1.32.1 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License Artistic-2.0 Depends R (>= 4.1.0) Imports stats, httr, xml2, jsonlite, utils, rlang, readr, GenomicRanges, IRanges, dplyr, rappdirs, tibble, tidyr System Requirements URL https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons http://bioconductor.github.io/GenomicDataCommons/ Bug Reports https://github.com/Bioconductor/GenomicDataCommons/issues/new See More Suggests BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools, BiocParallel, TxDb.Hsapiens.UCSC.hg38.knownGene, VariantAnnotation, maftools, R.utils, data.table Linking To Enhances Depends On Me Imports Me GDCRNATools, TCGAutils Suggests Me autonomics, imageTCGA Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.


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