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Bioconductor - GSCA

GSCA

This is the released version of GSCA; for the devel version, see GSCA.

GSCA: Gene Set Context Analysis

Bioconductor version: Release (3.21)

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("GSCA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSCA")
Details biocViews GUI, GeneExpression, Software, Visualization Version 2.38.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License GPL(>=2) Depends shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0) Imports graphics System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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