A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://www.bioconductor.org/packages/release/bioc/html/../../bioc/html/CelliD.html below:

Bioconductor - CelliD

CelliD

This is the released version of CelliD; for the devel version, see CelliD.

Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence Analysis

Bioconductor version: Release (3.21)

CelliD is a clustering-free multivariate statistical method for the robust extraction of per-cell gene signatures from single-cell RNA-seq. CelliD allows unbiased cell identity recognition across different donors, tissues-of-origin, model organisms and single-cell omics protocols. The package can also be used to explore functional pathways enrichment in single cell data.

Author: Akira Cortal [aut, cre], Antonio Rausell [aut, ctb]

Maintainer: Akira Cortal <akira.cortal at institutimagine.org>

Citation (from within R, enter citation("CelliD")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CelliD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CelliD")
Details biocViews ATACSeq, Clustering, DimensionReduction, GeneExpression, GeneSetEnrichment, RNASeq, SingleCell, Software Version 1.16.0 In Bioconductor since BioC 3.13 (R-4.1) (4 years) License GPL-3 + file LICENSE Depends R (>= 4.1), Seurat (>= 4.0.1), SingleCellExperiment Imports Rcpp, RcppArmadillo, stats, utils, Matrix, tictoc, scater, stringr, irlba, data.table, glue, pbapply, umap, Rtsne, reticulate, fastmatch, matrixStats, ggplot2, BiocParallel, SummarizedExperiment, fgsea System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4