This is the released version of CellBarcode; for the devel version, see CellBarcode.
Cellular DNA Barcode Analysis toolkitBioconductor version: Release (3.21)
The package CellBarcode performs Cellular DNA Barcode analysis. It can handle all kinds of DNA barcodes, as long as the barcode is within a single sequencing read and has a pattern that can be matched by a regular expression. \code{CellBarcode} can handle barcodes with flexible lengths, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing, and metagenome data.
Author: Wenjie Sun [cre, aut] ORCID: 0000-0002-3100-2346 , Anne-Marie Lyne [aut], Leila Perie [aut]
Maintainer: Wenjie Sun <sunwjie at gmail.com>
Citation (from within R, entercitation("CellBarcode")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CellBarcode")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellBarcode")Follow Installation instructions to use this package in your R session.
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