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Bioconductor - CAMERA

CAMERA

This is the released version of CAMERA; for the devel version, see CAMERA.

Collection of annotation related methods for mass spectrometry data

Bioconductor version: Release (3.21)

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("CAMERA")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAMERA")

Atom count expectations with compoundQuantiles PDF Isotope pattern validation with CAMERA PDF Molecule Identification with CAMERA PDF R Script Reference Manual PDF NEWS Text Details biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software Version 1.64.0 In Bioconductor since BioC 2.4 (R-2.9) (16 years) License GPL (>= 2) Depends R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5) Imports methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph System Requirements URL http://msbi.ipb-halle.de/msbi/CAMERA/ Bug Reports https://github.com/sneumann/CAMERA/issues/new See More Suggests faahKO, RUnit, BiocGenerics, multtest Linking To Enhances Rmpi, snow Depends On Me flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids Imports Me Suggests Me cliqueMS, msPurity, RMassBank, mtbls2 Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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